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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_89555065_89555441_F

Intron Information:

Intron Rank:
132903
Intron Class:
major
Intron Phase:
Intron Coordinates:
89555065 - 89555441
Intron Length:
377

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTCTGTCAC
5'SS Class:
major
3'SS Sequence:
ACATCTGTTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACACAT
U12 Branch Point Sequence:
ACTGACCTAACA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
62
0.28
1.4
55.9
43.4
Major BPS
69.9
0.49
1
75.2
29.8
Major PPT
69.1
0.43
0.9
66
40
Minor 5ss
35.6
-1.6
2.7
36.3
40.7
Minor BPS
49.4
-0
2
63.48
42.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000021506
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045074
89554902 - 89558569
3668