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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_89594581_89613715_F

Intron Information:

Intron Rank:
138134
Intron Class:
major
Intron Phase:
Intron Coordinates:
89594581 - 89613715
Intron Length:
19135

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATTGGGA
5'SS Class:
major
3'SS Sequence:
TTTCTCTCTGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATAAAT
U12 Branch Point Sequence:
TGCAGCAAAATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.1
0.47
1.1
58.6
40.4
Major BPS
65.7
0.39
1
71.3
30.3
Major PPT
89.7
0.89
0.6
85.1
22.4
Minor 5ss
34.7
-1.7
3.5
47.2
48.2
Minor BPS
41.1
-0.5
2.2
57.98
45

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000024289
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032465
89590662 - 89613892
23231