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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_89759319_89759411_F

Intron Information:

Intron Rank:
134810
Intron Class:
major
Intron Phase:
Intron Coordinates:
89759319 - 89759411
Intron Length:
93

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTGAGTACT
5'SS Class:
strong_major
3'SS Sequence:
TTTTGTTTAACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTCAT
U12 Branch Point Sequence:
TTTTGTTTAACA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.9
0.85
0.8
82.3
30
Major BPS
87.6
0.93
0.9
89.3
26
Major PPT
84.4
0.77
0.9
81
35.4
Minor 5ss
33.1
-1.9
2.7
40.7
39.2
Minor BPS
76.2
0.82
1.7
86.93
31.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000022498
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032820
89758636 - 89759531
896