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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_89759319_89839426_F

Intron Information:

Intron Rank:
134808
Intron Class:
major
Intron Phase:
Intron Coordinates:
89759319 - 89839426
Intron Length:
80108

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTGAGTACT
5'SS Class:
strong_major
3'SS Sequence:
TTGTCATTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTGAA
U12 Branch Point Sequence:
TTTTGAACATCT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.9
0.85
0.8
82.3
30
Major BPS
87.2
0.92
0.8
77.7
37.1
Major PPT
84.1
0.77
0.8
81.6
35
Minor 5ss
33.1
-1.9
2.7
40.7
39.2
Minor BPS
41
-0.6
2.4
70.67
45.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000022498
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023303
89759308 - 89839512
80205