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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_89939016_89940045_F

Intron Information:

Intron Rank:
126046
Intron Class:
major-like
Intron Phase:
Intron Coordinates:
89939016 - 89940045
Intron Length:
1030

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTACTGTGC
5'SS Class:
major
3'SS Sequence:
AATCTCATTTGAG|T
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
ATCTCAT
U12 Branch Point Sequence:
ACTTCTGTGATA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
68.8
0.44
1.1
57.8
42.2
Major BPS
86.1
0.9
0.7
85.7
22.9
Major PPT
53.4
0.08
1.7
63.5
41.9
Minor 5ss
36.1
-1.6
3.4
50.8
45.8
Minor BPS
49.9
-0
2
63.43
37.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000017912
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025022
89926243 - 89940392
14150