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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_89986526_89987440_F

Intron Information:

Intron Rank:
142284
Intron Class:
major
Intron Phase:
Intron Coordinates:
89986526 - 89987440
Intron Length:
915

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGGAAA
5'SS Class:
strong_major
3'SS Sequence:
TCTCTTGCAACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CCTTCAT
U12 Branch Point Sequence:
TTGTCCTTCATC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.5
0.79
0.9
76.6
33.7
Major BPS
75
0.62
1.1
77.2
36
Major PPT
73.5
0.53
0.9
69.3
35.7
Minor 5ss
37.7
-1.4
3.1
47.6
48.1
Minor BPS
69.7
0.6
1.7
77.89
38.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000026624
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027411
89986395 - 89988446
2052