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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_90000061_90002366_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
90000061 - 90002366
Intron Length:
2306

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGCCCC
5'SS Class:
strong_major
3'SS Sequence:
TGGTACTTTGTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGCTGAC
U12 Branch Point Sequence:
TGTTTGGTACTT
Flanking Amino Acid:
RGAPAAPSPSRSLSHDGGVE
Intron Amino Acid Position:
41

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.8
0.77
0.9
65.8
40.2
Major BPS
66.3
0.4
1.1
57
41.8
Major PPT
72.3
0.5
0.9
66.2
40.4
Minor 5ss
33.7
-1.9
3
42.6
44.4
Minor BPS
41.9
-0.5
2.6
67.31
44.3

Associated Gene:

Gene:
BBX
Ensembl Gene ID:
ENSAPLG00000005336
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034025
89999939 - 90125801
125863
ENSAPLT00000022901
89999939 - 90128316
128378
ENSAPLT00000005542
89999939 - 90135199
135261
ENSAPLT00000034378
89999939 - 90128316
128378