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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_90002446_90075215_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
90002446 - 90075215
Intron Length:
72770

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTGAGTGCT
5'SS Class:
strong_major
3'SS Sequence:
TTTTGCACGGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTGTGAA
U12 Branch Point Sequence:
TTCTTGTGAACA
Flanking Amino Acid:
SGCNFQSPSWVTVMKGSSRN
Intron Amino Acid Position:
68

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.6
0.77
0.9
74.9
35.3
Major BPS
72.1
0.55
1.2
63.4
44.3
Major PPT
71.4
0.48
1
67.2
39.1
Minor 5ss
29.4
-2.4
3.1
33.3
41.7
Minor BPS
53.8
0.11
2.2
71.44
41

Associated Gene:

Gene:
BBX
Ensembl Gene ID:
ENSAPLG00000005336
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022901
89999939 - 90128316
128378
ENSAPLT00000041239
90000774 - 90125801
125028
ENSAPLT00000005542
89999939 - 90135199
135261
ENSAPLT00000037991
90000774 - 90128302
127529
ENSAPLT00000034378
89999939 - 90128316
128378
ENSAPLT00000034025
89999939 - 90125801
125863