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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_90075387_90076921_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
90075387 - 90076921
Intron Length:
1535

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGACTTC
5'SS Class:
major
3'SS Sequence:
TCGGTTCTGGTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTATAAC
U12 Branch Point Sequence:
TATAACTGAGTT
Flanking Amino Acid:
EEEEEEDIDKVPLLGADGLE
Intron Amino Acid Position:
125

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.6
0.51
1.1
66.5
40.4
Major BPS
65.6
0.39
1.1
67.7
34.6
Major PPT
65
0.34
1
61.9
39.9
Minor 5ss
46.4
-0.4
3.3
66.9
44.7
Minor BPS
47.7
-0
1.9
68.52
41.8

Associated Gene:

Gene:
BBX
Ensembl Gene ID:
ENSAPLG00000005336
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019267
90072891 - 90125801
52911
ENSAPLT00000034025
89999939 - 90125801
125863
ENSAPLT00000041239
90000774 - 90125801
125028
ENSAPLT00000005542
89999939 - 90135199
135261
ENSAPLT00000026161
90002367 - 90125801
123435
ENSAPLT00000037991
90000774 - 90128302
127529
ENSAPLT00000023194
90031410 - 90128316
96907
ENSAPLT00000034554
90031410 - 90125801
94392
ENSAPLT00000022901
89999939 - 90128316
128378
ENSAPLT00000034378
89999939 - 90128316
128378