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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_90077165_90082951_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
90077165 - 90082951
Intron Length:
5787

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTACGTACT
5'SS Class:
strong_major
3'SS Sequence:
TTTTCTTTTCTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTATAAT
U12 Branch Point Sequence:
AATGTTACAACT
Flanking Amino Acid:
KQKYTDMAKEYKDAFMKANP
Intron Amino Acid Position:
206

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.3
0.9
0.9
84.6
33
Major BPS
70.1
0.5
1.3
72.3
40.4
Major PPT
90.8
0.92
0.6
85.1
29.7
Minor 5ss
37.3
-1.4
3
52.4
44.2
Minor BPS
46.1
-0.2
1.8
64.27
40.1

Associated Gene:

Gene:
BBX
Ensembl Gene ID:
ENSAPLG00000005336
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019267
90072891 - 90125801
52911
ENSAPLT00000034025
89999939 - 90125801
125863
ENSAPLT00000041239
90000774 - 90125801
125028
ENSAPLT00000005542
89999939 - 90135199
135261
ENSAPLT00000026161
90002367 - 90125801
123435
ENSAPLT00000037991
90000774 - 90128302
127529
ENSAPLT00000023194
90031410 - 90128316
96907
ENSAPLT00000034554
90031410 - 90125801
94392
ENSAPLT00000022901
89999939 - 90128316
128378
ENSAPLT00000034378
89999939 - 90128316
128378