Gene Search

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

90083151 - 90088864

Intron Length:

5714

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTGAGATTT

5'SS Class:

strong_major

3'SS Sequence:

ACTCTTTTAACAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

AAATGAA

U12 Branch Point Sequence:

ACTCTTTTAACA

Flanking Amino Acid:

EMPQLNFGMADPTQMGGLSM

Intron Amino Acid Position:

272

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

0.94

0.7

86.7

Major BPS

58.9

0.22

49.8

35.1

Major PPT

77.3

0.61

0.9

73.1

35.4

Minor 5ss

38.4

-1.3

3.3

55.7

48.5

Minor BPS

0.56

1.2

70.42

35.8

Associated Gene:

Gene:

BBX

Ensembl Gene ID:

ENSAPLG00000005336

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000005542

89999939 - 90135199

135261

ENSAPLT00000026161

90002367 - 90125801

123435

ENSAPLT00000037991

90000774 - 90128302

127529

ENSAPLT00000023194

90031410 - 90128316

96907

ENSAPLT00000034554

90031410 - 90125801

94392

ENSAPLT00000022901

89999939 - 90128316

128378

ENSAPLT00000034378

89999939 - 90128316

128378

ENSAPLT00000019267

90072891 - 90125801

52911

ENSAPLT00000034025

89999939 - 90125801

125863

ENSAPLT00000041239

90000774 - 90125801

125028

Intron Name: Anas_platyrhynchos_platyrhynchos_1_90083151_90088864_F

Intron Information:

Sequence Information:

Site Scores:

Associated Gene:

Associated Transcripts: