Gene Search

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

90088933 - 90092650

Intron Length:

3718

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTAAGGAAC

5'SS Class:

strong_major

3'SS Sequence:

CTTCTTGTTTCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

GTCTTAC

U12 Branch Point Sequence:

TTACTCTCCACG

Flanking Amino Acid:

AGEHALTAQEVSSNTCQSDA

Intron Amino Acid Position:

295

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

91.1

0.97

0.8

82.1

Major BPS

63.8

0.34

1.2

57.4

41.4

Major PPT

85.8

0.81

0.8

83.9

31.1

Minor 5ss

32.6

-2

3.1

42.1

Minor BPS

47.2

-0.3

57.74

43.6

Associated Gene:

Gene:

BBX

Ensembl Gene ID:

ENSAPLG00000005336

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000023194

90031410 - 90128316

96907

ENSAPLT00000034554

90031410 - 90125801

94392

ENSAPLT00000022901

89999939 - 90128316

128378

ENSAPLT00000034378

89999939 - 90128316

128378

ENSAPLT00000019267

90072891 - 90125801

52911

ENSAPLT00000034025

89999939 - 90125801

125863

ENSAPLT00000041239

90000774 - 90125801

125028

ENSAPLT00000005542

89999939 - 90135199

135261

ENSAPLT00000026161

90002367 - 90125801

123435

ENSAPLT00000037991

90000774 - 90128302

127529

Intron Name: Anas_platyrhynchos_platyrhynchos_1_90088933_90092650_F

Intron Information:

Sequence Information:

Site Scores:

Associated Gene:

Associated Transcripts: