Gene Search

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

90092732 - 90094967

Intron Length:

2236

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTGAGTTTC

5'SS Class:

strong_major

3'SS Sequence:

GTTTTCTTGACAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

ATATAAT

U12 Branch Point Sequence:

GTTTTCTTGACA

Flanking Amino Acid:

QKSSLFQFAEISSSTSQPGV

Intron Amino Acid Position:

322

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

93.4

1.02

0.7

87.4

21.4

Major BPS

0.72

78.4

31.2

Major PPT

79.8

0.67

76.3

37.8

Minor 5ss

39.3

-1.2

2.9

45.2

Minor BPS

79.3

0.92

82.87

Associated Gene:

Gene:

BBX

Ensembl Gene ID:

ENSAPLG00000005336

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000022901

89999939 - 90128316

128378

ENSAPLT00000034378

89999939 - 90128316

128378

ENSAPLT00000019267

90072891 - 90125801

52911

ENSAPLT00000034025

89999939 - 90125801

125863

ENSAPLT00000041239

90000774 - 90125801

125028

ENSAPLT00000005542

89999939 - 90135199

135261

ENSAPLT00000026161

90002367 - 90125801

123435

ENSAPLT00000037991

90000774 - 90128302

127529

ENSAPLT00000023194

90031410 - 90128316

96907

ENSAPLT00000034554

90031410 - 90125801

94392

Intron Name: Anas_platyrhynchos_platyrhynchos_1_90092732_90094967_F

Intron Information:

Sequence Information:

Site Scores:

Associated Gene:

Associated Transcripts: