Gene Search

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

90105594 - 90106538

Intron Length:

945

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTGGGTGGC

5'SS Class:

strong_major

3'SS Sequence:

GCCTTTATCCCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTGTGAA

U12 Branch Point Sequence:

TCTGCCTTTATC

Flanking Amino Acid:

LTSLRANVDRGKRSSGKGNS

Intron Amino Acid Position:

709

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

80.1

0.71

67.2

38.1

Major BPS

72.1

0.55

1.2

63.4

44.3

Major PPT

73.7

0.53

0.9

65.3

39.9

Minor 5ss

26.2

-2.7

3.2

34.3

Minor BPS

61.4

0.34

1.8

70.08

Associated Gene:

Gene:

BBX

Ensembl Gene ID:

ENSAPLG00000005336

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000022901

89999939 - 90128316

128378

ENSAPLT00000034378

89999939 - 90128316

128378

ENSAPLT00000041239

90000774 - 90125801

125028

ENSAPLT00000019267

90072891 - 90125801

52911

ENSAPLT00000034025

89999939 - 90125801

125863

ENSAPLT00000037991

90000774 - 90128302

127529

ENSAPLT00000005542

89999939 - 90135199

135261

ENSAPLT00000026161

90002367 - 90125801

123435

ENSAPLT00000023194

90031410 - 90128316

96907

ENSAPLT00000034554

90031410 - 90125801

94392

Intron Name: Anas_platyrhynchos_platyrhynchos_1_90105594_90106538_F

Intron Information:

Sequence Information:

Site Scores:

Associated Gene:

Associated Transcripts: