Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_90106678_90109348_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

90106678 - 90109348

Intron Length:

2671

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GGG|GTAAGTTGC

5'SS Class:

strong_major

3'SS Sequence:

GTTTCCCCTTTAG|C

3'SS Class:

major_PPT

U2 Branch Point Sequence:

GTTTAAT

U12 Branch Point Sequence:

TTACGTTTAATT

Flanking Amino Acid:

KTKPKEEFVLGLAKLEEEFE

Intron Amino Acid Position:

755

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

85.4

0.83

73.2

39.3

Major BPS

81.8

0.79

1.1

34.5

Major PPT

77.7

0.62

0.8

74.9

30.4

Minor 5ss

40.1

-1.1

2.8

44.4

43.5

Minor BPS

61.4

0.44

1.7

77.99

38.7

Associated Gene:

Gene:

BBX

Ensembl Gene ID:

ENSAPLG00000005336

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000019267

90072891 - 90125801

52911

ENSAPLT00000034378

89999939 - 90128316

128378

ENSAPLT00000005542

89999939 - 90135199

135261

ENSAPLT00000034025

89999939 - 90125801

125863

ENSAPLT00000041239

90000774 - 90125801

125028

ENSAPLT00000026161

90002367 - 90125801

123435

ENSAPLT00000037991

90000774 - 90128302

127529

ENSAPLT00000022901

89999939 - 90128316

128378

ENSAPLT00000034554

90031410 - 90125801

94392