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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_90106678_90109423_F

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
90106678 - 90109423
Intron Length:
2746

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGG|GTAAGTTGC
5'SS Class:
strong_major
3'SS Sequence:
TTACCTTTGACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTCAA
U12 Branch Point Sequence:
TTACCTTTGACA
Flanking Amino Acid:
KTKPKEEFVLGRCSSVPRKK
Intron Amino Acid Position:
734

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.4
0.83
1
73.2
39.3
Major BPS
74.2
0.6
0.9
75.7
28
Major PPT
75.4
0.57
1
72.1
37.7
Minor 5ss
40.1
-1.1
2.8
44.4
43.5
Minor BPS
71.8
0.68
1.1
76.75
33.5

Associated Gene:

Gene:
BBX
Ensembl Gene ID:
ENSAPLG00000005336
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023194
90031410 - 90128316
96907