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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_90117491_90124547_F

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
90117491 - 90124547
Intron Length:
7057

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACTGGTG
5'SS Class:
major
3'SS Sequence:
TGTTCTTTTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTAAA
U12 Branch Point Sequence:
TTATTCTACATT
Flanking Amino Acid:
KKEKLNVPDTAIFLEDKNSS
Intron Amino Acid Position:
835

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.7
0.46
1.1
60.8
43.9
Major BPS
81.6
0.78
0.8
82
24.9
Major PPT
90.2
0.9
0.7
88.4
28.7
Minor 5ss
31.8
-2.1
3.8
46.5
48.8
Minor BPS
51.3
0.12
2.1
75.74
41.7

Associated Gene:

Gene:
BBX
Ensembl Gene ID:
ENSAPLG00000005336
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026161
90002367 - 90125801
123435
ENSAPLT00000023194
90031410 - 90128316
96907
ENSAPLT00000037991
90000774 - 90128302
127529
ENSAPLT00000022901
89999939 - 90128316
128378
ENSAPLT00000034554
90031410 - 90125801
94392
ENSAPLT00000005542
89999939 - 90135199
135261
ENSAPLT00000034025
89999939 - 90125801
125863