About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_90125618_90128214_F

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
90125618 - 90128214
Intron Length:
2597

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACGGTTT
5'SS Class:
strong_major
3'SS Sequence:
TCTTCTTTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAATGAT
U12 Branch Point Sequence:
TTTTCTTTTCTT
Flanking Amino Acid:
AEVAAMENVHRSQRATPLPH
Intron Amino Acid Position:
939

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.2
0.78
1
79.7
36.4
Major BPS
76.8
0.67
1
66
40.9
Major PPT
92
0.94
0.6
87.8
22.1
Minor 5ss
41.6
-0.9
3.6
64.2
47.3
Minor BPS
46.2
-0.2
3.6
83.31
38.3

Associated Gene:

Gene:
BBX
Ensembl Gene ID:
ENSAPLG00000005336
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037991
90000774 - 90128302
127529
ENSAPLT00000034378
89999939 - 90128316
128378
ENSAPLT00000023194
90031410 - 90128316
96907
ENSAPLT00000022901
89999939 - 90128316
128378