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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_90125618_90135186_F

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
90125618 - 90135186
Intron Length:
9569

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACGGTTT
5'SS Class:
strong_major
3'SS Sequence:
TTTCTTTGTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTTTTAC
U12 Branch Point Sequence:
TATGTTTTACCT
Flanking Amino Acid:
AEVAAMENVHRLEN*
Intron Amino Acid Position:
965

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.2
0.78
1
79.7
36.4
Major BPS
68.8
0.47
1.2
63.4
44
Major PPT
84.1
0.77
0.8
84.8
30
Minor 5ss
41.6
-0.9
3.6
64.2
47.3
Minor BPS
58.5
0.35
1.7
75.92
41.3

Associated Gene:

Gene:
BBX
Ensembl Gene ID:
ENSAPLG00000005336
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005542
89999939 - 90135199
135261