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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_90166967_90170091_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
90166967 - 90170091
Intron Length:
3125

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAGGTGAT
5'SS Class:
major
3'SS Sequence:
TTTTAATTTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAT
U12 Branch Point Sequence:
TTTCTTTTAATT
Flanking Amino Acid:
PRKAVEEPLNELKTETESTA
Intron Amino Acid Position:
296

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.5
0.7
1
74.1
36.5
Major BPS
99.5
1.23
0.5
98.2
4.2
Major PPT
86.4
0.82
0.8
78
40.1
Minor 5ss
33.1
-1.9
3.5
45
45.5
Minor BPS
77.3
0.94
1
88.63
29.6

Associated Gene:

Gene:
CD47
Ensembl Gene ID:
ENSAPLG00000005590
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046671
90166814 - 90186171
19358
ENSAPLT00000017831
90166920 - 90186171
19252
ENSAPLT00000005797
90166920 - 90188616
21697