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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_90170117_90172351_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
90170117 - 90172351
Intron Length:
2235

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTAAGCTTA
5'SS Class:
strong_major
3'SS Sequence:
AAATGTTTTGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
ATATTTTTAAAT
Flanking Amino Acid:
SRMKDHQTPRKAVEEPLNEL
Intron Amino Acid Position:
288

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.8
0.75
1
75
38.1
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
73.4
0.53
1
66.2
44.1
Minor 5ss
47
-0.3
2.8
56.2
48
Minor BPS
69.2
0.68
1.3
80.13
35.2

Associated Gene:

Gene:
CD47
Ensembl Gene ID:
ENSAPLG00000005590
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029556
90169475 - 90186171
16697
ENSAPLT00000017831
90166920 - 90186171
19252
ENSAPLT00000005797
90166920 - 90188616
21697
ENSAPLT00000046671
90166814 - 90186171
19358