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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_90172384_90173659_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
90172384 - 90173659
Intron Length:
1276

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTT|GTAAGTAGC
5'SS Class:
major
3'SS Sequence:
TAATTGCTTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGTTCAT
U12 Branch Point Sequence:
TTTTTGGTAATT
Flanking Amino Acid:
LLALLYMYTSCSRMKDHQTP
Intron Amino Acid Position:
277

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76
0.61
1.1
70.9
39.2
Major BPS
84.8
0.86
1
85.7
34.9
Major PPT
73.6
0.53
0.9
70.6
40.6
Minor 5ss
38.7
-1.3
2.8
51.8
39.1
Minor BPS
51.2
0.11
2.6
82.74
39.5

Associated Gene:

Gene:
CD47
Ensembl Gene ID:
ENSAPLG00000005590
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005797
90166920 - 90188616
21697
ENSAPLT00000046671
90166814 - 90186171
19358
ENSAPLT00000029556
90169475 - 90186171
16697
ENSAPLT00000017831
90166920 - 90186171
19252