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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_90173753_90175312_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
90173753 - 90175312
Intron Length:
1560

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGCAAT
5'SS Class:
strong_major
3'SS Sequence:
TGTTTCTTAACAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAC
U12 Branch Point Sequence:
TGTTTCTTAACA
Flanking Amino Acid:
ALVGFALCISACPSELLSVV
Intron Amino Acid Position:
246

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92
0.99
0.8
87
30
Major BPS
86.6
0.91
0.8
77.7
36.7
Major PPT
81.4
0.71
0.9
77.5
35.6
Minor 5ss
41
-1
2.9
56.9
47.4
Minor BPS
85.7
1.12
0.9
87.92
29.1

Associated Gene:

Gene:
CD47
Ensembl Gene ID:
ENSAPLG00000005590
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029556
90169475 - 90186171
16697
ENSAPLT00000017831
90166920 - 90186171
19252
ENSAPLT00000005797
90166920 - 90188616
21697
ENSAPLT00000046671
90166814 - 90186171
19358