About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_90175409_90175924_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
90175409 - 90175924
Intron Length:
516

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTGAGTATT
5'SS Class:
strong_major
3'SS Sequence:
TTGTCTTTTCCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATAAAA
U12 Branch Point Sequence:
ATACTATAAAAT
Flanking Amino Acid:
MVLQYYIFKIVLVDVTRKGY
Intron Amino Acid Position:
214

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.8
0.89
0.8
88.7
25.1
Major BPS
65.3
0.38
1
71.6
30.1
Major PPT
88
0.85
0.8
80.8
36.8
Minor 5ss
36.4
-1.5
3
48.3
41.8
Minor BPS
45.2
-0.2
1.9
63.22
40.2

Associated Gene:

Gene:
CD47
Ensembl Gene ID:
ENSAPLG00000005590
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046671
90166814 - 90186171
19358
ENSAPLT00000029556
90169475 - 90186171
16697
ENSAPLT00000017831
90166920 - 90186171
19252
ENSAPLT00000005797
90166920 - 90188616
21697