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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_90176018_90177444_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
90176018 - 90177444
Intron Length:
1427

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGTGAA
5'SS Class:
strong_major
3'SS Sequence:
CAACTGTTTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
GTTTTACTAATT
Flanking Amino Acid:
AVIAVVLFIQGGNITINKVG
Intron Amino Acid Position:
183

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
96.3
1.09
0.7
86.7
22.1
Major BPS
100
1.24
0.5
100
0
Major PPT
72.2
0.5
1
65
40.7
Minor 5ss
32
-2.1
3.1
39.9
46.1
Minor BPS
55.4
0.25
1.9
78.49
37.5

Associated Gene:

Gene:
CD47
Ensembl Gene ID:
ENSAPLG00000005590
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029556
90169475 - 90186171
16697
ENSAPLT00000017831
90166920 - 90186171
19252
ENSAPLT00000005797
90166920 - 90188616
21697
ENSAPLT00000046671
90166814 - 90186171
19358