About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_90180519_90184143_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
90180519 - 90184143
Intron Length:
3625

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGTTGT
5'SS Class:
strong_major
3'SS Sequence:
GTTTATTCTGTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGTTTAT
U12 Branch Point Sequence:
TCTTTGTTTATT
Flanking Amino Acid:
ETKVDLRTVTGRQFDFMESV
Intron Amino Acid Position:
119

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.2
0.99
0.7
83.9
30.3
Major BPS
81.3
0.78
1.1
71.7
44.6
Major PPT
79.3
0.66
0.8
74.2
36.3
Minor 5ss
36.5
-1.5
2.9
49.7
46.6
Minor BPS
49.6
0.05
2.3
74.69
42.7

Associated Gene:

Gene:
CD47
Ensembl Gene ID:
ENSAPLG00000005590
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046671
90166814 - 90186171
19358
ENSAPLT00000005797
90166920 - 90188616
21697