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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_90207704_90211784_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
90207704 - 90211784
Intron Length:
4081

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGTGAG
5'SS Class:
strong_major
3'SS Sequence:
ATCTTTTTTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAC
U12 Branch Point Sequence:
TTTACTTTATGG
Flanking Amino Acid:
LKVTVRTDNKDWRIHVDQIH
Intron Amino Acid Position:
41

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.7
0.87
0.9
74
36.6
Major BPS
78.8
0.71
0.9
69.7
37.1
Major PPT
85.7
0.8
0.7
85
29
Minor 5ss
38.1
-1.3
3.1
48.2
47.9
Minor BPS
51.4
-0.1
2
63.62
44.5

Associated Gene:

Gene:
IFT57
Ensembl Gene ID:
ENSAPLG00000005696
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005896
90204087 - 90211904
7818