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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_90399862_90408942_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
3UTR
Intron Coordinates:
90399862 - 90408942
Intron Length:
9081

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGTCTC
5'SS Class:
strong_major
3'SS Sequence:
TTCTTTTATGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTTAT
U12 Branch Point Sequence:
GTGTGTTTAACA
Flanking Amino Acid:
3UTR
Intron Amino Acid Position:
3UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.5
0.98
0.8
81.3
32.8
Major BPS
84.1
0.85
0.9
75.3
39.4
Major PPT
87.7
0.85
0.8
84.7
29
Minor 5ss
33.3
-1.9
3
43.8
43.9
Minor BPS
63.6
0.42
1.8
71.61
40.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000018561
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018044
90398604 - 90505524
106921