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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_90399862_90414445_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
90399862 - 90414445
Intron Length:
14584

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGAAAA
5'SS Class:
strong_major
3'SS Sequence:
TTCTTTTATGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTTAT
U12 Branch Point Sequence:
GTGTGTTTAACA
Flanking Amino Acid:
GYEELDGSCHESKYRLEFCV
Intron Amino Acid Position:
282

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.1
0.83
0.9
78.7
29.9
Major BPS
84.1
0.85
0.9
75.3
39.4
Major PPT
87.7
0.85
0.8
84.7
29
Minor 5ss
32.9
-1.9
2.9
37.3
41.2
Minor BPS
63.6
0.42
1.8
71.61
40.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000018561
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034684
90398604 - 90505524
106921