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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_90415110_90504959_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
90415110 - 90504959
Intron Length:
89850

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGG|GTAAGTCAC
5'SS Class:
strong_major
3'SS Sequence:
GATTTCTTTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTTAT
U12 Branch Point Sequence:
TTTCTCACAATC
Flanking Amino Acid:
LGWKTFPLNGWDAITEMDEH
Intron Amino Acid Position:
61

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85
0.82
1
72.3
39.5
Major BPS
79.9
0.74
0.9
69.7
37.1
Major PPT
84.4
0.77
0.8
81.3
36
Minor 5ss
34.1
-1.8
2.9
36.4
40.6
Minor BPS
51.2
0.02
1.8
68.94
36.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000018561
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034684
90398604 - 90505524
106921
ENSAPLT00000018044
90398604 - 90505524
106921