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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_90625103_90676208_F

Intron Information:

Intron Rank:
140754
Intron Class:
major
Intron Phase:
Intron Coordinates:
90625103 - 90676208
Intron Length:
51106

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTGAGTAGG
5'SS Class:
strong_major
3'SS Sequence:
ATCACTTTGACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCTAAC
U12 Branch Point Sequence:
CTCTCTCTAACC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.7
0.77
0.9
70.5
41.3
Major BPS
72.3
0.55
1
73.3
28.9
Major PPT
69.3
0.43
1
64.6
40.8
Minor 5ss
29.8
-2.3
2.6
30.3
36.7
Minor BPS
62.1
0.36
1.7
70.59
41.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000025781
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047534
90622933 - 90681031
58099
ENSAPLT00000019509
90624255 - 90677765
53511
ENSAPLT00000017390
90624255 - 90681031
56777