Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_90703650_90710311_F

Intron Information:

Intron Rank:

131140

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

90703650 - 90710311

Intron Length:

6662

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTAAAATGT

5'SS Class:

strong_major

3'SS Sequence:

TAAAAATAATAAG|G

3'SS Class:

degenerate_major

U2 Branch Point Sequence:

TAAAAAT

U12 Branch Point Sequence:

GCTTCATTAAAA

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

82.1

0.76

0.9

74.9

36.1

Major BPS

62.8

0.32

1.1

67.9

34.4

Major PPT

46.8

-0.1

1.2

44.4

44.5

Minor 5ss

-1.2

3.2

56.6

47.5

Minor BPS

62.5

0.39

1.7

70.99

40.5

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000020449

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000034619

90701162 - 90710405

9244