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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_90703650_90714857_F

Intron Information:

Intron Rank:
131138
Intron Class:
major
Intron Phase:
Intron Coordinates:
90703650 - 90714857
Intron Length:
11208

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAAATGT
5'SS Class:
strong_major
3'SS Sequence:
TTGTCATCCACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAA
U12 Branch Point Sequence:
TGTTTTTCAATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.1
0.76
0.9
74.9
36.1
Major BPS
90.8
1.01
0.7
91.9
19.6
Major PPT
75.6
0.58
0.9
69.5
35.8
Minor 5ss
39
-1.2
3.2
56.6
47.5
Minor BPS
65.5
0.57
1.5
80.29
35.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000020449
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026602
90702259 - 90715282
13024