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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_90715054_90716807_F

Intron Information:

Intron Rank:
131133
Intron Class:
major-like
Intron Phase:
Intron Coordinates:
90715054 - 90716807
Intron Length:
1754

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGT|GTCAGTGTG
5'SS Class:
weak_major
3'SS Sequence:
TCTTTCTTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTAAA
U12 Branch Point Sequence:
ATCATTTAAACA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
59.4
0.22
1.4
60
44.9
Major BPS
81.6
0.78
0.8
82
24.9
Major PPT
93.4
0.98
0.6
92.1
18.5
Minor 5ss
33.7
-1.9
3.2
41.9
44.6
Minor BPS
50.9
0.03
1.7
61.32
39.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000020449
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019668
90710188 - 90719068
8881