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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_90716463_90716807_F

Intron Information:

Intron Rank:
131135
Intron Class:
major
Intron Phase:
Intron Coordinates:
90716463 - 90716807
Intron Length:
345

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTTTGTTTT
5'SS Class:
major
3'SS Sequence:
TCTTTCTTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTAAA
U12 Branch Point Sequence:
ATCATTTAAACA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.9
0.49
1.2
74.4
36.2
Major BPS
81.6
0.78
0.8
82
24.9
Major PPT
93.4
0.98
0.6
92.1
18.5
Minor 5ss
48.7
-0.1
2.4
65.1
40.4
Minor BPS
50.9
0.03
1.7
61.32
39.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000020449
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021070
90716402 - 90719068
2667