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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_90734237_90760654_F

Intron Information:

Intron Rank:
128296
Intron Class:
major
Intron Phase:
Intron Coordinates:
90734237 - 90760654
Intron Length:
26418

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAA|GTAAGAGTC
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTTTTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTCAT
U12 Branch Point Sequence:
TTCATGGCATTT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.8
0.75
0.9
76.1
31.5
Major BPS
92.2
1.05
0.7
91.9
19.6
Major PPT
95.8
1.03
0.5
96.6
11.7
Minor 5ss
36.7
-1.5
3.5
51
39.9
Minor BPS
32.5
-1.2
2.5
51.54
43.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000019096
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032703
90733755 - 90771621
37867