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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_90760722_90762736_F

Intron Information:

Intron Rank:
128297
Intron Class:
major
Intron Phase:
Intron Coordinates:
90760722 - 90762736
Intron Length:
2015

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGGAGTT
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTTTTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATATAT
U12 Branch Point Sequence:
GCATACATAATG
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.6
0.79
1
78.9
35.3
Major BPS
71.4
0.53
1
67.3
39.3
Major PPT
95.8
1.03
0.5
96.6
11.7
Minor 5ss
35
-1.7
3.8
55.2
49
Minor BPS
47.7
-0.3
1.8
51.19
42.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000019096
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041437
90759989 - 90771621
11633
ENSAPLT00000032703
90733755 - 90771621
37867