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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_90771565_90775532_R

Intron Information:

Intron Rank:
131742
Intron Class:
major
Intron Phase:
Intron Coordinates:
90771565 - 90775532
Intron Length:
3968

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAAAAGC
5'SS Class:
strong_major
3'SS Sequence:
TCTGTACTCTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTTAA
U12 Branch Point Sequence:
ATTTCTTTAAGG
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.4
0.74
1
72.3
37.6
Major BPS
74.7
0.61
1
65.9
40.9
Major PPT
72.7
0.51
0.8
70.3
35.3
Minor 5ss
33.2
-1.9
3
43.7
43.6
Minor BPS
70
0.49
1.7
73.4
39.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000018073
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032011
90770946 - 90779947
9002