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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_90772624_90806758_F

Intron Information:

Intron Rank:
123273
Intron Class:
major-like
Intron Phase:
Intron Coordinates:
90772624 - 90806758
Intron Length:
34135

Sequence Information:

Terminal Dinucleotides:
GT-GG
5'SS Sequence:
ATG|GTAAGAAGT
5'SS Class:
strong_major
3'SS Sequence:
TAATTTGTTGCGG|T
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
ATTTCAT
U12 Branch Point Sequence:
AGATCTCTAATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.5
0.81
0.9
77.2
37.6
Major BPS
91.2
1.02
0.7
91.7
20.2
Major PPT
43.6
-0.3
3.2
65.7
44.9
Minor 5ss
35.3
-1.7
3.1
46.5
42.9
Minor BPS
58.8
0.35
1.6
72.91
37.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000016456
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041083
90772384 - 90807452
35069