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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_90775708_90779759_R

Intron Information:

Intron Rank:
131743
Intron Class:
major
Intron Phase:
Intron Coordinates:
90775708 - 90779759
Intron Length:
4052

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGGGGG
5'SS Class:
major
3'SS Sequence:
CCTTCTCTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACTCAT
U12 Branch Point Sequence:
TGTACCACATCT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.9
0.68
1
60.4
44.3
Major BPS
87.1
0.92
0.7
85.9
22.5
Major PPT
85.6
0.8
0.7
80.2
25.1
Minor 5ss
34.7
-1.7
3.5
46.4
49
Minor BPS
47
-0.1
2.1
71.47
44.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000018073
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032011
90770946 - 90779947
9002