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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_9080684_9107874_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
9080684 - 9107874
Intron Length:
27191

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGAAGT
5'SS Class:
strong_major
3'SS Sequence:
TCTTCTATTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAGTGAT
U12 Branch Point Sequence:
GTTTCTTCTATT
Flanking Amino Acid:
AQFQYTEGFMTKGSSSITPS
Intron Amino Acid Position:
425

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.5
0.81
0.9
77.2
37.6
Major BPS
73.5
0.58
1.2
63.4
44.3
Major PPT
86.3
0.82
0.7
81.3
29
Minor 5ss
35.3
-1.7
3.1
46.5
42.9
Minor BPS
55.7
0.26
1.8
76.82
39.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000013931
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014510
9079412 - 9110155
30744