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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_90806895_90807108_F

Intron Information:

Intron Rank:
123274
Intron Class:
major
Intron Phase:
Intron Coordinates:
90806895 - 90807108
Intron Length:
214

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGAAGA
5'SS Class:
strong_major
3'SS Sequence:
CTACTCCACTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CACTTAT
U12 Branch Point Sequence:
TCCTACTCCACT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.4
0.98
0.8
80.8
33.7
Major BPS
71.3
0.53
1
61.3
37
Major PPT
64.6
0.33
0.9
62.8
33.2
Minor 5ss
32.8
-2
2.9
40.7
45.1
Minor BPS
47.9
-0
2.2
68.84
47.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000016456
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041083
90772384 - 90807452
35069