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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_90940829_90941819_R

Intron Information:

Intron Rank:
134149
Intron Class:
major
Intron Phase:
Intron Coordinates:
90940829 - 90941819
Intron Length:
991

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGAGTC
5'SS Class:
strong_major
3'SS Sequence:
ATATTTTTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
GATTTTTTAAAT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92
0.99
0.8
82.4
28.6
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
85.3
0.79
0.8
77.6
40.8
Minor 5ss
35
-1.7
3.5
49.9
46.6
Minor BPS
68.6
0.66
1.3
78.89
36.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000019451
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039141
90940160 - 90942396
2237