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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_91244059_91245489_R

Intron Information:

Intron Rank:
137878
Intron Class:
major
Intron Phase:
Intron Coordinates:
91244059 - 91245489
Intron Length:
1431

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAAGTGGC
5'SS Class:
strong_major
3'SS Sequence:
TTTATCCTTACAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TTATCCTTACAG
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
94.3
1.04
0.8
79.7
35.4
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
86.9
0.83
0.7
80.8
31.2
Minor 5ss
33
-1.9
3.2
43.9
43.9
Minor BPS
63.1
0.27
1.8
69.74
43.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000021677
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046079
91243697 - 91379162
135466