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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_91314352_91378816_R

Intron Information:

Intron Rank:
137880
Intron Class:
major
Intron Phase:
Intron Coordinates:
91314352 - 91378816
Intron Length:
64465

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAACCAA
5'SS Class:
major
3'SS Sequence:
TTTTCTCTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTGTGAG
U12 Branch Point Sequence:
TGTTTGTGAGTC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.9
0.68
1
67.5
39.6
Major BPS
57.3
0.18
1.7
57.1
49.4
Major PPT
92.3
0.95
0.6
85.1
29.7
Minor 5ss
36.5
-1.5
3.1
47
48.3
Minor BPS
44.3
-0.4
2.2
59.42
40

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000021677
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046079
91243697 - 91379162
135466