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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_91410826_91424460_R

Intron Information:

Intron Rank:
143184
Intron Class:
major
Intron Phase:
Intron Coordinates:
91410826 - 91424460
Intron Length:
13635

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGAGCA
5'SS Class:
strong_major
3'SS Sequence:
CTTTTATCTCTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTTAT
U12 Branch Point Sequence:
ATGCTTTTATCT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.6
0.96
0.8
77.8
30
Major BPS
84.1
0.85
0.9
75.3
39.4
Major PPT
81.7
0.71
0.8
74.5
35.4
Minor 5ss
30.7
-2.2
3.3
39.5
45.9
Minor BPS
55.7
0.26
1.6
71
40.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000024379
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025456
91409960 - 91435004
25045