About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_91424681_91434836_R

Intron Information:

Intron Rank:
143185
Intron Class:
major
Intron Phase:
Intron Coordinates:
91424681 - 91434836
Intron Length:
10156

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCT|GTAAGTATA
5'SS Class:
major
3'SS Sequence:
TGCTTGGTTTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACTAAT
U12 Branch Point Sequence:
TATGTACTAATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.8
0.65
1.1
80.4
34
Major BPS
86.7
0.91
0.7
84.2
21.8
Major PPT
76.1
0.59
1
72.5
42.4
Minor 5ss
42.2
-0.9
2.9
61.3
43
Minor BPS
48.2
-0
2
70.61
40.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000024379
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025456
91409960 - 91435004
25045
ENSAPLT00000039617
91422741 - 91435105
12365