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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_91428197_91434836_R

Intron Information:

Intron Rank:
143186
Intron Class:
major
Intron Phase:
Intron Coordinates:
91428197 - 91434836
Intron Length:
6640

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCT|GTAAGTATA
5'SS Class:
major
3'SS Sequence:
TATCTTTCATCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTATTAT
U12 Branch Point Sequence:
TTATCTTTCATC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.8
0.65
1.1
80.4
34
Major BPS
67
0.42
1.3
60.1
46.3
Major PPT
78.9
0.65
0.9
78.6
34.2
Minor 5ss
42.2
-0.9
2.9
61.3
43
Minor BPS
64.6
0.44
1.7
74.68
36.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000024379
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031828
91427968 - 91456877
28910