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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_91449004_91454121_R

Intron Information:

Intron Rank:
143189
Intron Class:
major
Intron Phase:
Intron Coordinates:
91449004 - 91454121
Intron Length:
5118

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGTCAA
5'SS Class:
strong_major
3'SS Sequence:
TCATTTCTGGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TGTCCATTAACC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
95.1
1.06
0.7
83.2
30.8
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
75.9
0.58
1
73.1
37
Minor 5ss
33.5
-1.9
2.9
40.7
45.5
Minor BPS
70.1
0.61
1.6
78.59
35.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000024379
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035696
91448878 - 91456113
7236