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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_91532054_91533625_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
91532054 - 91533625
Intron Length:
1572

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATATAT
5'SS Class:
strong_major
3'SS Sequence:
TTTTATTTTTAAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
ATTTTTTTATTT
Flanking Amino Acid:
SITILQCAYPGQFLCNEYDD
Intron Amino Acid Position:
160

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.8
0.77
0.9
79.6
29.2
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
82.3
0.73
1
87.2
30.4
Minor 5ss
39.7
-1.2
3.1
56.3
47.9
Minor BPS
66
0.58
1.5
81.3
34.9

Associated Gene:

Gene:
NSUN3
Ensembl Gene ID:
ENSAPLG00000011623
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012108
91517468 - 91535459
17992